Stargate:SG1 is not really a big fandom for enemy ship? Jack O'Neill/Harry Maybourne really should have been, by all rights, but it always turned up more in background than actually being shipped. (Maybe Maybourne's actor wasn't sufficiently hot? It's always tragic when that happens.) And Daniel/Vala counts, I guess, but that era of canon always had a weird overlay of echoes of Farscape, and I didn't know Farscape enough to decode them. There were plenty of other possibilities really, but none of them went anywhere.

Maybe it was something about the timing, SG1 falling square into the LJ era, when mailing lists and hand-rolled archives were on their way out in favor of social media, AO3 wasn't around yet, and there wasn't really a space for small pairings to build a community? Or maybe Jack/Daniel and Jack/Sam just used up all the air in the the room.

So really this is on the list for one specific fic but it is one of my favorite fics of all time, it has all the best things in it, and I have read it lots times. Lots.

• Conflict of Interest (5631 words) by Maraceles
  Fandom: Stargate SG-1
  Rating: Explicit
  Warnings: Creator Chose Not To Use Archive Warnings
  Relationships: Ba'al/Jack O'Neill
  Series: 2 parts
  Summary:

  Jack and Ba'al get thrown in a Goa'uld prison together. Despite whatever else is between them, they're still enemies. They can work with that.